Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDVTILTIFPEMFPGFLNYSLAGKALEKKIWNLQVINIRFFAKDRHLTVDHIPYGGGAGMIMRPDVVGDAVDSVLSTHKDTK-FIYMTPSGTKFDQSIARELVGFPHITILCGRFEGIDQRVIDEYTPYELSIGDYILSGGEPAAMVILDVCVRLLPGVVNNSGSITEESFSYSGGVLEYPQYTRPKQWRKHRVPKILLSGNHKKISDWRQKQSQVITKRRRPELLDGEINDKFT
4MCD Chain:A ((3-226))
---IGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVL---------SF--ADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQ
General information:
TITO was launched using:
RESULT:
Template:
4MCD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -186246 for 1517 contacts (-122.8/contact) +
2D Compatibility (PS) -22818 + (NN) -7714 + (LL) 404
1D Compatibility (HY) -18800 + (ID) 4450
Total energy: -239624.0 ( -157.96 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_4MCD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MCD-query.scw
PDB file :
Tito_Scwrl_4MCD.pdb
: