Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYRIVSSNILKYKNCEPKIDESAFIAGDSHIVGKVEIGREASIWFNCVIRGDIGSIKIGDGTNIQDGTVIHVDRNPGGDTIIGDMVTVGHFCMLHACTVHDKALIGMGSIVMDHAIVESEAMVAAGSLVTHRKVIKSGEMWAGRPAKFFKKISDEEVKYITQSAQNYIMLMKKYKN
1XHD Chain:A ((2-170))
-----NAMIYPYKEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLH--QSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRELTAEDRKDMERIRTQYVEKGQYYKS
General information:
TITO was launched using:
RESULT:
Template:
1XHD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145967 for 1431 contacts (-102.0/contact) +
2D Compatibility (PS) -18792 + (NN) -9616 + (LL) 912
1D Compatibility (HY) -12800 + (ID) 3600
Total energy: -189863.0 ( -132.68 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_1XHD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XHD-query.scw
PDB file :
Tito_Scwrl_1XHD.pdb
: