Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIKNFQNNNDWSELLVSVRRVTTVTKGGRRFSFSILVVVGDEKGRVGCGMGKHAEVAEARIKAVNAAKKSMIRVYLREGRTLHHDIKAKFCSGEIVLRAARAGTGIIAGGAIRSVFEVLGIKDVVAKSTRSNNPHNVICAVFKAFDNMLSPRQVASKRGKKISEVVGNR
1PKP Chain:A ((6-147))
------PNKLELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEVPIV-GTTIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPINMVRATFDGLKQLK--------------------
General information:
TITO was launched using:
RESULT:
Template:
1PKP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116395 for 1197 contacts (-97.2/contact) +
2D Compatibility (PS) -15347 + (NN) -5183 + (LL) 1752
1D Compatibility (HY) -11600 + (ID) 3350
Total energy: -150123.0 ( -125.42 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_1PKP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PKP-query.scw
PDB file :
Tito_Scwrl_1PKP.pdb
: