Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSPCPRAKVCFSPGEDCAVLIISEIDQSKESVLVQEYTFTLETIARALINAKERSVDVEVILDKSQLHSKYSVINKLFSNGIPVWIDDKPKIAHNKVIIVDNQK--------------------VITGSFNLTKTAKKGNAENLLIIKNYPELVQQYVKNWEIRKSQSYKYAS
4GEM Chain:A ((63-188))
---------------------IVEQIDRAVYSIDLAIYTFTSLFLADSIKRALQRGVIIRIISDGEMVYSKGSQISMLAQLGVPVRVPITTNLMHNAFCIIDGFERVEEIRLLRKLKFMRPCYSIVISGSVNWTALGLGGNWENCIITADDKLTATFQAEFQRMWRAFAK----
General information:
TITO was launched using:
RESULT:
Template:
4GEM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62172 for 764 contacts (-81.4/contact) +
2D Compatibility (PS) -11372 + (NN) -310 + (LL) 1356
1D Compatibility (HY) -9200 + (ID) 1850
Total energy: -83548.0 ( -109.36 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_4GEM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GEM-query.scw
PDB file :
Tito_Scwrl_4GEM.pdb
: