Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKALIFTSLVVVVLIVVTFLYKNNETNDLQVVNVYSSRKEELVRTLFDEFTRNTGIKVRYIIDDYSQLLSRMENG--SGTDVFLTADAVNLILAKKRGLLSQVNSEILKRAIPEKFRDSEGYWFGLTKRTRILVYNKESVD--PKDLSTYEDLANKKWKGKILVRSSTSPYNRSLIAFMIANNGFEKTKEWVSGIVSNMARKPSGGDTNQIYAVAAGEGDIAIVNSYYFARILSSERENKKNVANKLGVFFPNHDSNGVMVNISGAAVTKNAKNRENAIALLEFLVSKQAQELYAKKNQEYPIIEGVEVSNILKFWGDYPQSDLPLSELEKHLFEAVMIADECKWK |
| 1Q35 Chain:A ((4-313)) | --------------------------------VNVYSYRQPYLIEPMLKNFEKDTGIKVNIIFAD-GLVDRVKQEGELSPADVLLTVDISRVMEIVNADLAQKIDSKVLEKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFD-YLDLAKPEYKGKVCVRSGKNSYNVSLFAAMIEHYGIEKTKAFLEGLKANLARKPQGGDRDQVKAIKEGICDYSIGNSYYYGKMLDDEKQ--KSWAEAAIINFPSGE-HGTHKNISGVVIAKHSPNKANAVKLIEYLSGEKAQGLYAELNHEYPVKEGIEPSAIVKGWGTFKSDTIKLEDIAKNYEAALKLVDEVKFD |
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General information:
TITO was launched using:
| RESULT:
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Template: 1Q35.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -165641 for 2692 contacts (-61.5/contact) +
2D Compatibility (PS) -33973 + (NN) -21596 + (LL) 3668
1D Compatibility (HY) -25200 + (ID) 6100
Total energy: -248842.0 ( -92.44 by residue)
QMean score : 0.603
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