Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKKLTENKKPLVDKEDKKTPPVKGFTKKNKSRRDFITLTTCAMASIGTVSGLWPLIKSMNPSAEVLAMSTVEVNLSGIQEGHGIKVKWQGKPVFIRRRTKQEIKAARVVNVEDLRDPQSDEQRVHKGKD-EWLIMVGVCTHLGCVPVEHATKDGNGWFCPCHGSYYDTSGRVIGGPAPKNMVVPDYFFPNENVVVIGKKA
2IBZ Chain:E ((21-184))
----------------------------KGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRV---KDPQWLIMLGICTHLGCVPIGEA-GDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPAYEFDGDKVIVG----
General information:
TITO was launched using:
RESULT:
Template:
2IBZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44802 for 1059 contacts (-42.3/contact) +
2D Compatibility (PS) -17186 + (NN) -1172 + (LL) 1260
1D Compatibility (HY) -15600 + (ID) 4300
Total energy: -81800.0 ( -77.24 by residue)
QMean score : 0.435
(partial model without unconserved sides chains):
PDB file :
Tito_2IBZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IBZ-query.scw
PDB file :
Tito_Scwrl_2IBZ.pdb
: