Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTNQTVRGTKDLLFDEWYRFKYIQQIANRISSLYGFLPAQTPIFEYTEVFMKTLGDGSDIINKEMYTFYDKGGKSITLRPEFTAAIVRLLVEKKLQI---PIKLFSTGPAFRYERPQKGRQRQFHQINFEVFGVENPKADIELISLAHHLLTEFNISKNVRLEINSLGDSETIAKY----KEVLIPYFKKFQNDLSEDSQNRLTKNPLRILDSKDEKDKLIISD--APKISDYYTRESSDFFEQILNGLTALNIPCTVNSKLVRGLDYYCHTVFEFVIEDFGAQGAVFAGGRYDNLVSSVGGKYTPAIGFAGGIERI---MELINYSMKGDR--PICLVPIGREAEEHALTLANELRRNGLYVIYEYNGALKNRMKKASQA---NAKAALIFGNEELGSKTLKIKNMDTGEEKIIAYGNIMENIHQTLLV |
| 4RDX Chain:A ((4-406)) | -TARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEK-----------EMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKELGL-RRLKVKLSSVGDPEDRARYNAYLREVLSPH----REALSEDSKERLELNPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHLKEVERHLERLSVPYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPRVPGVGFAFGVERVALALEAEGFGLPEEKGPDLYLIPLTEEAVAEAFYLAEALRPR---LRAEYALAPRKPAKGLEEALKRGAAFAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQALG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RDX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -183126 for 2838 contacts (-64.5/contact) +
2D Compatibility (PS) -41009 + (NN) -14470 + (LL) 828
1D Compatibility (HY) -23600 + (ID) 7850
Total energy: -269227.0 ( -94.87 by residue)
QMean score : 0.511
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