Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDFAVRYKITIEYNGSSFSGWQKQQHSAN--SIQETIENAIFNFS------GE---KVTLHCGGRTDAGVHALGQVAHFDMERKFELYKIRNAINYHLKSIPIVVLNAETVDNTFHSRFSAKKRYYEYRIINRYAPAALEAGYAWQVFNPLDVNIMREAAKYLL---GKHNLLSFRS-KDCQATNPIRTIDDI----DIVQNGSHI-YIKISAISFLHNQVRIIVGTLVEFGKSRTNPQKMLNILNQCKRNAAGVTAPPFGLYLAKIDY
4ITS Chain:A ((16-268))
--------LLMAYSGKGYHGMQR-----QFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKV---WLIDDILEKINSHLPS-HIRILGLKRVTGGFN----CDARTYCY-LLPTFAFAHKDRDVQDETYR-LSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYA-PESVLE-RSWGTEKVDVPKAPGLGLVLERVHF
General information:
TITO was launched using:
RESULT:
Template:
4ITS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135842 for 1590 contacts (-85.4/contact) +
2D Compatibility (PS) -23410 + (NN) -2017 + (LL) 1988
1D Compatibility (HY) -17200 + (ID) 3100
Total energy: -179581.0 ( -112.94 by residue)
QMean score : 0.387
(partial model without unconserved sides chains):
PDB file :
Tito_4ITS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ITS-query.scw
PDB file :
Tito_Scwrl_4ITS.pdb
: