Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMIFRLLFLLVFISVNSYAVIKQDLSNNHYIQKINEITSKELLLPLPDDKLLGDSKAPILMIEYASLTCYHCSLFHREVFPEIKKKYIDTGKMLYIFRHFPLDYRGLKAAMLSYCYEKQEDYFNFNKAVFNSIDSW-------------NYSNLSDLTVLQKVA---------ALSNLKQDTFNRCINDKEVMDKIINDKSLAINKLGIMATPIFFIKLNNDRSHTEPNKIRHEGYKAQEYFTNVIDRLYEKAIVK
3GMF Chain:A ((9-174))
--------------------------------------------------LLGNPAAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFVRDPIDMTVALITNCVPPSR-FFTLHTAFMRSQAQWIGPLANSTEAQRQRWFNGTFATRTRAIASDFRFYDFMAARGMDRSTLDRCLSNEALAKKLAAETDEAINQYNVSGTPSFMIDGILLAGTHDWASLRPQILARLNE---------------
General information:
TITO was launched using:
RESULT:
Template:
3GMF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106458 for 1012 contacts (-105.2/contact) +
2D Compatibility (PS) -15069 + (NN) -7744 + (LL) 4832
1D Compatibility (HY) -7600 + (ID) 2000
Total energy: -134039.0 ( -132.45 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_3GMF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GMF-query.scw
PDB file :
Tito_Scwrl_3GMF.pdb
: