Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVFGLHHFNYTLKKNKNDVAKALFEYGAKIDVDYVEERLIISGTTEYSQSTVEILLPYASI
4M13 Chain:A ((23-55))
--FGLVHLGYWL--NKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAP
General information:
TITO was launched using:
RESULT:
Template:
4M13.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -446 for 124 contacts (-3.6/contact) +
2D Compatibility (PS) -3295 + (NN) 1660 + (LL) 528
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -4303.0 ( -34.70 by residue)
QMean score : -0.113
(partial model without unconserved sides chains):
PDB file :
Tito_4M13.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M13-query.scw
PDB file :
Tito_Scwrl_4M13.pdb
: