Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFVRLLSSILVALSVIFLGYCYFTKKGIFAPAVIHNAEVKIGGDFSLINQDGQVIRSNDFKDKYMMIFFGFSSCKKICPMNLGIISETLAKLDEKTSDKLQTFFITVDPECDSTEKLKEFQQQFDYRIQMLTGERKKIDEVIANYKVYTSKV----GGEEGINHSSIIYLIGPGGKYVTHFAADLNSDESQSDKIAAEIKKYINEL
2K6V Chain:A ((18-172))
---------------------------------------------DFALEGPQGPV-RLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPD---KAEATDRVVADLQALL---
General information:
TITO was launched using:
RESULT:
Template:
2K6V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68380 for 1203 contacts (-56.8/contact) +
2D Compatibility (PS) -16713 + (NN) -10282 + (LL) 4512
1D Compatibility (HY) -12000 + (ID) 2100
Total energy: -104963.0 ( -87.25 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_2K6V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K6V-query.scw
PDB file :
Tito_Scwrl_2K6V.pdb
: