Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDENINFETDTTFALIKEAQRRKYKVFAYAPSNLALKLNQPIALAQKVSV---DDCNFTSKE-DVVINLNEMDIIFIRQDPPFDMR--Y-ITTTYILEKTRALVINNPTEMRNCPEKLITSLFPELIPPTLITENISMIRDFYHDYRGIILKPLYSYGGNDVIRIQNENSIQ-VVVELMITKYKCPVIAQAFCKN-VNKDKRILLLDGQPIG-VMKRVPRVSGEIRTNLRLGASFEPVEMNDRDNEICNKIGPELKKRGLIFVGIDIVDDFLLEINITSPTGVVYINKLYNTSLEKDLWNTFEEKASSHISQPSL |
| 1GSA Chain:A ((18-314)) | --------KDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQ-DLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLRDCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQ-GGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARLQ-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GSA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -152300 for 2238 contacts (-68.1/contact) +
2D Compatibility (PS) -30879 + (NN) -8847 + (LL) 1220
1D Compatibility (HY) -18800 + (ID) 5000
Total energy: -214606.0 ( -95.89 by residue)
QMean score : 0.468
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