Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNKSFILSTGSYLPKKKLGNDEIALMVETSDEWIRQRTGITQRYIADEAELTSDLAVNSAKNAIEKAQISVDEIGLIIVATTTPDKTLPSCATIAQNKLKCKNAFSFDVQAACSGFIYAVTIADSLIKSNDRIKYALVIGAEIMSRIVDWKDRSTCVLFGDGAGAVIMKSTAHCNEMTENSTRGIISTNLYSDGNVDVLCTKGGISSTGDSGKIYMNGREVFKHAVDKLTASIEETLRCNNLKITDIDWLVPHQANIRIIEAVVKKLNFLMEKVINTVDQHANTSAASIPLALDYAIQKPKIKPGSLGILVAIGAGLTWGSVLLRY |
| 2EBD Chain:A ((5-309)) | -----IIGTGVYLPKNVLTNFDLEKIVDTSDEWITTRTGIKERRIAKEETITY-MATQAAKEALREANLSPEELDLIILATLTPQKRFPSTACLVQAQLKAKGVYAFDISAACSGFIYALDIADSFIKSG-KAKNVLVIGAEKLSEAVDWEDRSTCVLFGDGAGAVVVTRSEDKSD--------ILATRMYAEGSLEELL------HADNCGYIRMKGRELFKVAVRSMEEVCREVLEKAGVKPEEVSLVIPHQANVRIINALAEKLNIPKEKVFVNIQKYGNTSAASIPIALHEAIKEGKVKRGDLILMTAMGGGLTWGAVLLRY |
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General information:
TITO was launched using:
| RESULT:
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Template: 2EBD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -268760 for 2862 contacts (-93.9/contact) +
2D Compatibility (PS) -32002 + (NN) -8889 + (LL) 328
1D Compatibility (HY) -28800 + (ID) 7600
Total energy: -345723.0 ( -120.80 by residue)
QMean score : 0.477
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