Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFVNGGQLKKINQKWLIIGTGLLLFMMML-----PSIILLAKMTIGLVMVLVVAIAIKIASKTISNVLEDKQADPNQLTSQTTQSRIINLAVGLVSIFTGGLSLLIIAKTGIAVICAAVVTLAIYEYAKDYKYAEDKEIGKSINDKLDEIAKNTTNFIVSGIEKLVSPQEQQV
3B60 Chain:A ((156-209))
-----------------------LFIMMFYYSWQLSIILV-------VLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPL
General information:
TITO was launched using:
RESULT:
Template:
3B60.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17580 for 199 contacts (-88.3/contact) +
2D Compatibility (PS) -4819 + (NN) 1454 + (LL) 2316
1D Compatibility (HY) -6800 + (ID) 950
Total energy: -26379.0 ( -132.56 by residue)
QMean score : 0.233
(partial model without unconserved sides chains):
PDB file :
Tito_3B60.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3B60-query.scw
PDB file :
Tito_Scwrl_3B60.pdb
: