Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFSNLYRGLLKTSSRFSDGVKSIFSAKKKLDQSLLDELEELLISMDIGHKTSKLIIDRLASIKFDKEVEHNI-ITQQLMSEIEAILNPVVQPLIL---DKNPHIIMVCGVNGNGKTTTIGKLAYKYKNMGKSVMLVACDTFRAAASEQLNIWAERSDCFIVTGEYGND-SASVAYRAVSQAIKGSVDVVLIDTAGRLQNNVNLMEELSKIYRTIKKLDGTAPHDVILVLDATTGQNAYSQLEAFSKMVSVTGLIITKLDGTAKGGVVIGLAETYRVKLHAIGIGESIEDLREFTSKEFAKALFGCD
4AK9 Chain:A ((111-382))
-------------------------------ESILDELEEVLLVSDFGPKTALKIVDTIRKDILAGRLKSGPQIKEALKKNIFKLLTERVTTTELQLGNSRPAVLMIVGVNGGGKTTTLGKLANRFKKEGVKVLMAAGDT--AAAGEQLEVWAQRTGSEIVMA----PRPAAVLSQAVRRAVEEDFDVVLCDTSGRLHTNYNLMEELRGCKRAVSKALSSAPNEVLLVLDGTTGLNMLAQAREFNQVIGVTGFILTKLDGTARGGCVVSVVDELSIPVKFVGVGEGIDDLQPFDAQSFVDALFP--
General information:
TITO was launched using:
RESULT:
Template:
4AK9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -225932 for 2203 contacts (-102.6/contact) +
2D Compatibility (PS) -28625 + (NN) -14275 + (LL) 1828
1D Compatibility (HY) -24800 + (ID) 5650
Total energy: -297454.0 ( -135.02 by residue)
QMean score : 0.569
(partial model without unconserved sides chains):
PDB file :
Tito_4AK9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AK9-query.scw
PDB file :
Tito_Scwrl_4AK9.pdb
: