Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDRMYEQNQMPHNNEAEQSVLGSIIIDPELINTTQEVLLPESFYRGAHQHIFRAMMHL-NEDNKEIDVVTLMDQLSTEGTLNEAGGPQYLAELSTNVPTTRNVQYYTDIVSKHALKRRLIQTADSIANDGYNDELELDAILSDAERRILELSSSRESDGFKDIRDVLGQVYETAEELDQNSGQTPGIPTGYRDLDQMTAGFNRNDLIILAARPSVGKTAFALNIAQKVATHEDMYTVGIFSLEMGADQLATRMICSSGNVDSNRLRTGTMTEEDWSRFTIAVGKLSRTKIFIDDTPGIRINDLRSKCRRLKQEHGLDMIVIDYLQLIQGSGSRASDNRQQEVSEISRTLKALARELECPVIALSQLSRGVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNRGGDEDDDDDGGFEPQTNDENGEIEIIIAKQRNGPTGTVKLHFMKQYNKFTDIDYAHADMM |
4NMN Chain:A ((2-433)) | ----------PCDESAERAVLGSMLEDPENIPLVLEYLKEEDFCIDEHKLLFRVLTNLWSEYGNKLDFVLIKDHLEKKNLLQ---I-DWLEELYEEAVSPDTLEEVCKIVKQRSAQRAIIQLGIELIHKGKENK-DFHTLIEEAQSRIFSIAES--STQFYHVKDVAEEVIELIYKFKSSDRLVTGLPSGFTELDLKTTGFHPGDLIILAARPGMGKTAFMLSIIYNLAKDEGKPS-AVFSLEMSKEQLVMRLLSMMSEVPLFKIRSGSISNEDLKKLEASAIELAKYDIYLDDTPALTTTDLRIRARKLRKEKEVEFVAVDYLQLLRPPVRKSP--RQEEVAEVSRNLKALAKELRIPVMALAQLSREVEKRSDKRPQLADLRESGQIEQDADLILFLHRPEYYTKKPN---------------EQGIAEVIIAKQRQGPTDIVKLAFIKEYTKFANLE------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4NMN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -171340 for 3116 contacts (-55.0/contact) +
2D Compatibility (PS) -46851 + (NN) -21594 + (LL) 1612
1D Compatibility (HY) -35600 + (ID) 8250
Total energy: -282023.0 ( -90.51 by residue)
QMean score : 0.468
|
|
|