Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNDMLISLVIPVFALLVIGGIIWVIIEGIVHISKKNKAIDNFLNQVNKVSETYKFATAFLFLILATAGISQFYLYYIVSAFLFWLVILTFGIAGII--FLMPYGLCFLPLYKQKKKKQTFKKYMVYTTIGLSICLGLSLVLVHTTKIYMDEGGVRYYYGSFVMKQAGGYAYLALAVLSTLLIVAKKATNKNKEIETVDNTNITER |
2K1A Chain:A ((966-998)) | ----------------------------------------------------------------------------------IWWVLVGV-LGGLLLLTILVLAMWKVGFFKRNRP----------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2K1A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -15205 for 115 contacts (-132.2/contact) +
2D Compatibility (PS) -3049 + (NN) -937 + (LL) 15368
1D Compatibility (HY) -6400 + (ID) 200
Total energy: -10423.0 ( -90.63 by residue)
QMean score : 0.400
|
|
|