Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMQQLSLKHRLNNGDSVYGIFNSIPDPLMIEVIAASGYDFVVIDTEHVAINDETLAHLIRAAEAAHIIPIVRVTAVIDRDIIKVLDMGARGIIVPHVKDRETVEHIVKLSRYYPQGLRSLNG--GRMARFGRTPLLDAMEMANEHIMVIAMIEDVEGVMAIDDIAQVEGLDMIVEGAADLSQSLGIPWQTRDDQVTSHVQHIFEV----VNAHGKH--FCAL-PREDEDIAKWQAQ----GVQTFILGDDRGKIYRHLSASLATSKQKGDDG
2VWT Chain:A ((9-245))
------FKERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGR--IENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYP----DNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDTMLYSD-----------------------
General information:
TITO was launched using:
RESULT:
Template:
2VWT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160577 for 1747 contacts (-91.9/contact) +
2D Compatibility (PS) -23851 + (NN) -5274 + (LL) 1860
1D Compatibility (HY) -13600 + (ID) 3850
Total energy: -205292.0 ( -117.51 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_2VWT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VWT-query.scw
PDB file :
Tito_Scwrl_2VWT.pdb
: