Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDRFYNWLINQKIYKEYV--ENFYL----HRGYTLQQKIKILISLYIVI-GFSIYMVDVLAVRVGLIIMVIIQTAVLFTFVKTLPKSNHKIEE
4LWK Chain:A ((118-184))
---------------------------------------------------EKIYTEIVPLENFYLAEGYHQKYYLQNTTKLYQTLKAIYGGFGNLVRSTLAARMNGYIAGNLSIASL----------------
General information:
TITO was launched using:
RESULT:
Template:
4LWK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46350 for 315 contacts (-147.1/contact) +
2D Compatibility (PS) -5918 + (NN) 2256 + (LL) 6008
1D Compatibility (HY) -4000 + (ID) 1200
Total energy: -49204.0 ( -156.20 by residue)
QMean score : 0.191
(partial model without unconserved sides chains):
PDB file :
Tito_4LWK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LWK-query.scw
PDB file :
Tito_Scwrl_4LWK.pdb
: