Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRPTNNKFILPIITFIIFLGIWEMVIIIGHYQPVLLPGPALVGKSIWTFIVTGEIFQHLAISLWRFVAGFVVALLVAIPLGFLLGRNR-WLYNAIEPLFQLIRPISPIAWAPFVVLWFGIG--------------SLPAIAIIFIAAFFPIVFNTIKGVRDIEPQYLKIAANLNLTGWSLYRNILFPGAFKQIMAGIHMAVGTSWIFLVSGEMIGA-QSGLGFLIVDARNMLNLEDVLAAIFFIGLFGFIIDRFISYIEQFILRRFGE
2ONK Chain:C ((57-275))
------------------------------------------NFDEFLKAASDPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAYYPMIAPTLIYERYLSEGLSAAMPVAAILILLSLAVFVALRIIVG--------
General information:
TITO was launched using:
RESULT:
Template:
2ONK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -239531 for 1536 contacts (-155.9/contact) +
2D Compatibility (PS) -20298 + (NN) -826 + (LL) 4292
1D Compatibility (HY) -12000 + (ID) 1200
Total energy: -269563.0 ( -175.50 by residue)
QMean score : 0.331
(partial model without unconserved sides chains):
PDB file :
Tito_2ONK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ONK-query.scw
PDB file :
Tito_Scwrl_2ONK.pdb
: