Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAMIKMSPEEIRAKSQSY----GQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQEQDQQLSNNFGLQ
4J42 Chain:A ((8-87))
----KITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQ----WAGATQAKFRGEFIQSKQAMQQFIPILEGISTDLKRIADKFR-------------
General information:
TITO was launched using:
RESULT:
Template:
4J42.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7440 for 334 contacts (-22.3/contact) +
2D Compatibility (PS) -8179 + (NN) -840 + (LL) 1808
1D Compatibility (HY) -5200 + (ID) 1050
Total energy: -20901.0 ( -62.58 by residue)
QMean score : 0.773
(partial model without unconserved sides chains):
PDB file :
Tito_4J42.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J42-query.scw
PDB file :
Tito_Scwrl_4J42.pdb
: