Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVPEEKGSITLSKEAAIIFATAKFKPFKNRIKNNPLKTNPFLKLHENKKS
1VQ8 Chain:D ((156-172))
--------HRLNPADAVAFIESTYD-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2319 for 58 contacts (-40.0/contact) +
2D Compatibility (PS) -1859 + (NN) -716 + (LL) 1164
1D Compatibility (HY) -800 + (ID) 150
Total energy: -4680.0 ( -80.69 by residue)
QMean score : 0.184
(partial model without unconserved sides chains):
PDB file :
Tito_1VQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQ8-query.scw
PDB file :
Tito_Scwrl_1VQ8.pdb
: