Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI
4HDC Chain:A ((2-205))
-SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERII---------DQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI
General information:
TITO was launched using:
RESULT:
Template:
4HDC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86465 for 1572 contacts (-55.0/contact) +
2D Compatibility (PS) -21373 + (NN) -10611 + (LL) 504
1D Compatibility (HY) -28800 + (ID) 9750
Total energy: -156495.0 ( -99.55 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_4HDC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HDC-query.scw
PDB file :
Tito_Scwrl_4HDC.pdb
: