Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHNDLKEVLLTEEDIQNICKELGAQLTKDYQGKPLVCVGILKGSAMFMSDLIKRIDTHLSIDFMDVSSYHGGTESTGEVQIIKDLGSSIENKDVLIIEDILETGTTLKSITELLQSRKVNSLEIVTLLDKPNRRKADIEAKYVGKKIPDEFVVGYGLDYRELYRNLPYIGTLKPEVYSN
2GEB Chain:A ((10-184))
--EDIEEILITEEQLKAKVKELGEMITRDYEGKDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGSSTKSSGIVKIIKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICTILDKPERREADVKVDYCGFKIPDKFVVGYGIDYAEKYRNLPFIGVLKPELY--
General information:
TITO was launched using:
RESULT:
Template:
2GEB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128235 for 1357 contacts (-94.5/contact) +
2D Compatibility (PS) -18824 + (NN) -3686 + (LL) 144
1D Compatibility (HY) -22000 + (ID) 5050
Total energy: -177651.0 ( -130.91 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_2GEB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GEB-query.scw
PDB file :
Tito_Scwrl_2GEB.pdb
: