Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRVITYGTYDLLHYGHIELLRRAREM--GDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESIRYVDLVIPEKGWGQKEDDVEKFDVDVFV---MGHDWEGEFDF---LKDKCEVIYLKRTEGISTTKIKQELYGKDAK
4MVD Chain:B ((98-228))
--RVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQRTEGISTSDI----------
General information:
TITO was launched using:
RESULT:
Template:
4MVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58819 for 873 contacts (-67.4/contact) +
2D Compatibility (PS) -13201 + (NN) -5053 + (LL) 852
1D Compatibility (HY) -6000 + (ID) 1750
Total energy: -83971.0 ( -96.19 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_4MVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MVD-query.scw
PDB file :
Tito_Scwrl_4MVD.pdb
: