Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIYFSFTG-NVRRFIKRTELENTLEITAENCMEPVHEPFIIVTGTIG----FGEVPEPVQSFL--EVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
3N39 Chain:C ((23-148))
-QLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIENVRKGVTEF------------
General information:
TITO was launched using:
RESULT:
Template:
3N39.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61948 for 883 contacts (-70.2/contact) +
2D Compatibility (PS) -12551 + (NN) -1048 + (LL) 668
1D Compatibility (HY) -9600 + (ID) 2300
Total energy: -86779.0 ( -98.28 by residue)
QMean score : 0.344
(partial model without unconserved sides chains):
PDB file :
Tito_3N39.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N39-query.scw
PDB file :
Tito_Scwrl_3N39.pdb
: