Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQH---TPTINEF-KTIIANTGVEINKLFNTHGAKYREL--DLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
2KOK Chain:A ((7-115))
-VTIYGIKNCDTMKKARIWLEDHGIDYTFHDYKKEGLDAETLDRFLKT------VPWEQLLNRAGTTFRKLPEDVRSNVDAAS---ARELMLAQPSMVKRPVLERDGKLMVGFKPAQYE-----
General information:
TITO was launched using:
RESULT:
Template:
2KOK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42023 for 637 contacts (-66.0/contact) +
2D Compatibility (PS) -10736 + (NN) -3 + (LL) 1144
1D Compatibility (HY) -8800 + (ID) 1800
Total energy: -62218.0 ( -97.67 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_2KOK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KOK-query.scw
PDB file :
Tito_Scwrl_2KOK.pdb
: