Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNFNKLKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFENISAQQLKLLCEKYNIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETLG---YPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIETSECVAEKYLNIKKEVSLTVTRGNNNQITFFPLQENEHRNQILFKTIVPARIDKTA---EAKEQVNKIIQSIHFIGTFTVEFFIDSNNQLYVNEIAPRPHNSGHYSIEACDYSQFDTHILAVTGQSLPNSIELLKPAVMMNLLGK----------DLDLLENEFNEHPEWHLHIYGKSGRKDSRKMGHMTVLTNDVNQTEQDMYAKFEGSN |
4E4T Chain:A ((35-393)) | --------GAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVSTEFENVPAASLDFLARTTFVAPAGRCVAVAQDRIAEKRFIEASGVPVAPHVVIESAAALAALDDAALDAVLPGILKTARLGYDGKGQVRVSTAREARDAHAALGGVPCVLEKRLPLKYEVSALIARGADGRSAAFPLAQNVHHNGILALTIVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVLEDGSFVANEMAPRPHNSGHYTVDACATSQFEQQVRAMTRMPLGNPRQ-HSPAAMLNILGDVWFPNGAAAGAVTPPWDTVAAMPAAHLHLYGKEEARVGRKMGHV---------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4E4T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -136191 for 2954 contacts (-46.1/contact) +
2D Compatibility (PS) -38157 + (NN) -20636 + (LL) 2004
1D Compatibility (HY) -17200 + (ID) 6600
Total energy: -216780.0 ( -73.39 by residue)
QMean score : 0.457
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