Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNKLIAKSLLTIAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVR
2NOJ Chain:B ((52-109))
-----------------------------------------------------------------------------------------------------------NKKVVDAQKAVELFKRTRTVATHRKAQRAVNLIHFQHSYEKKKLQRQIDLVLKYNTLK
General information:
TITO was launched using:
RESULT:
Template:
2NOJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5001 for 380 contacts (-13.2/contact) +
2D Compatibility (PS) -6369 + (NN) -3576 + (LL) 5676
1D Compatibility (HY) -4000 + (ID) 1300
Total energy: -14570.0 ( -38.34 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_2NOJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NOJ-query.scw
PDB file :
Tito_Scwrl_2NOJ.pdb
: