Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKNIVIKSMAALAILTSVTGINAAVVEETQQIANAEKNVTQVKDTNNFPYNGVVSFKDATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGG-IYKIKSISDYPGDEDISVMNIEEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKDNILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIG-SEYNGAVYFTPQIKDFIQKHIEQ
4INK Chain:A ((3-205))
------------------------------------ENSVKLITNTNVAPYSGVTWMGAGTGFVVGNHTIITNKHVTYHMKVGDEIKAHPNGFYNNGGGLYKVTKIVDYPGKEDIAVVQVEEKSTQ--PKGRKFKDFTSKFNIASEAKENEPISVIGYPNPNGNKLQMYESTGKVLSVNGNIVTSDAVVQPGSSGSPILNSKREAIGVMYASDKPTGESTRSFAVYFSPEIKKFIADNLDK
General information:
TITO was launched using:
RESULT:
Template:
4INK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68567 for 1725 contacts (-39.7/contact) +
2D Compatibility (PS) -22343 + (NN) -12971 + (LL) 3676
1D Compatibility (HY) -15600 + (ID) 4850
Total energy: -120655.0 ( -69.94 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_4INK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4INK-query.scw
PDB file :
Tito_Scwrl_4INK.pdb
: