Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKFFFIGLLVFVVFFTAATIIWFSYDKNKYGTKQYDKTFKDDAFDNVSINLDSTELRIKRGNQ-FRVKYDGD----NDILINIVDKTLKISDKRSKTRGYAIDMNPFHENKKTLTIEMPDKMIKRLNLSSGAGSVRISD-VDLENTSIQ-SINGEVVIKNS-NLDALDSK-TNNSSTYISKSNIKNSNIK-VVIGTLQIDKSQIKQSIFL-NDHGDIEFKNMPSKVDAKAS-TKQGDIRFKYDSKPEDTILKLNPGTGDSVVKNKTFTNGKVGKSDNVLEFYTIDGNIKVE |
| 3LYC Chain:A ((32-248)) | -----------------------------------TTENIPVSEYDCLELEGGGMVVNYTQSDAPEGLEIKTDRNIFEKYEFNVENHKLKIRPKKEFR--KH--TN-FRPTEFMVTANSRN--LKKLAA-AGSTHVNINSPLQAEEFEAGLAGSGIIQFHDTASFTNLKIEIAGSGDFVGHKVYCEELNGDMAGSNTIVLGGTV-GIAEFSIAGSGTVRAFDCTM-DELECKIAGSGDIEAFVVN---KIKAEI-AGSGSVKYKGD-------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LYC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 122088 for 1579 contacts (77.3/contact) +
2D Compatibility (PS) -20042 + (NN) 7929 + (LL) 4556
1D Compatibility (HY) 11600 + (ID) 650
Total energy: 125481.0 ( 79.47 by residue)
QMean score : 0.032
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