Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVKVANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLKMVD---------------SNPTQTAEQRR----ELINGVFTDINPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEELDKIVKLVTQQTKLSKVIVDTKINPDLIGGFRVKVGTTVLDGSVRNDLVQLQRKFRRVN |
3ZU0 Chain:A ((434-532)) | -------------------NTLYTYKMEGSLVKQVLEDAM-QFALVDGSTGAFPYGAGIRYEANETPNAEGKRLVSVEVLNK-TQQWEPIDDNKRYLVGTNAYVAGGKDGYKTFGKLFN------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ZU0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -267 for 483 contacts (-0.6/contact) +
2D Compatibility (PS) -7746 + (NN) 1709 + (LL) 7748
1D Compatibility (HY) -5200 + (ID) 1200
Total energy: -4956.0 ( -10.26 by residue)
QMean score : 0.245
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