Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLVTATTLTAGIGTALVGQAHHADAAENYTNYNNYNYNTTQTTTTTTTTTTTSSISHSGNLYTAGQCTWYVYDKVGGEIGSTWGNANNWAAAAQGAGFTVNHTPSKGAILQSSEGPFGHVAYVESVNSDGSVTISEMNYSGGPFSVSSRTISASEAGNYNYIHI
2K3A Chain:A ((1-154))
MKKLVTATTLTAGIGAAIVGLDHGNEADAAEQTQP-TNQ-----------STTQSTSGSSANLYTAGQCTWYVYDKVGGNIGSTWGNANNWASAASSAGYTVNNSPEAGSILQSTAGGYGHVAYVENVNSDGSVEVSEMNYNGGPFSVSERTISAGEASSYNYIHL
General information:
TITO was launched using:
RESULT:
Template:
2K3A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70453 for 958 contacts (-73.5/contact) +
2D Compatibility (PS) -17011 + (NN) -10432 + (LL) 428
1D Compatibility (HY) -13200 + (ID) 5350
Total energy: -116018.0 ( -121.10 by residue)
QMean score : 0.309
(partial model without unconserved sides chains):
PDB file :
Tito_2K3A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K3A-query.scw
PDB file :
Tito_Scwrl_2K3A.pdb
: