Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKLLTLFIVSMLILTACGKKESATTSSKNGKPLVVIYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYESYEKLLKDKIK
4GXZ Chain:A ((31-186))
-----------------------SPRIGAKHPKLTLVNFTDYNCPYCKQLD-PMLEKIVQKYPD---VAVIIKPLPFKGESSVLAARIALTTWREHPQQFLALHEKLM-----QKRVYHT----DDSIKQ------AQQKAGATPVTLDEKSMETIRTNLQLARLVGVQGTPATIIGDELIPGAVPWDTLEAVVKEKL-
General information:
TITO was launched using:
RESULT:
Template:
4GXZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17544 for 1250 contacts (-14.0/contact) +
2D Compatibility (PS) -16643 + (NN) -6481 + (LL) 4200
1D Compatibility (HY) -10800 + (ID) 2200
Total energy: -49468.0 ( -39.57 by residue)
QMean score : 0.419
(partial model without unconserved sides chains):
PDB file :
Tito_4GXZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GXZ-query.scw
PDB file :
Tito_Scwrl_4GXZ.pdb
: