Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFYEFMQSFLGDDTPLGELVDWINQDSNFPREVKSHSEILSYFRTNPCPESISVPVIKRALSVFNQFTNVQ
4LNE Chain:A ((172-215))
---------------PQGTPVEWVEEESYFFRLSAYQDKLLDLYENNP------------------------
General information:
TITO was launched using:
RESULT:
Template:
4LNE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -777 for 97 contacts (-8.0/contact) +
2D Compatibility (PS) -3470 + (NN) -609 + (LL) 2828
1D Compatibility (HY) -2000 + (ID) 500
Total energy: -4528.0 ( -46.68 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_4LNE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LNE-query.scw
PDB file :
Tito_Scwrl_4LNE.pdb
: