Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTHQLDAVIPHLTYLAHEDTLIILAQNGYGQLEHIPFKNVCQAVVYIS----GQKKGDVVTHFRDYQLRI----QDNALTRQFRDLVQDSQIDIVLEANIQQAIWYKLLVNLGINSITALGR-QTVAIMHNP-EIRILCRQLLLDGCRVAQAEGLNFS-EQTVDTIMTIYQGYPDEMGTSMYYDIVHQQPLEVEAIQGFIYRRAREHNLDTPYLDTIYSFLRAYQQNM
1KS9 Chain:A ((59-286))
--------------------------------------------------------DFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEEL--QNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEV----AAVIEREGHHTSAEDLRDYVMQVIDATAENI-SSMLQDIRALRHTEIDYINGFLLRRARAHGIAVPENTRLFEMVK------
General information:
TITO was launched using:
RESULT:
Template:
1KS9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175847 for 1647 contacts (-106.8/contact) +
2D Compatibility (PS) -22557 + (NN) -1638 + (LL) 4596
1D Compatibility (HY) -13600 + (ID) 3000
Total energy: -212046.0 ( -128.75 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_1KS9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KS9-query.scw
PDB file :
Tito_Scwrl_1KS9.pdb
: