Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPN------NEGLSSLLLNWSTYQDSIISTEI----QDLDVLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLF----SKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNR----MPKDKSASYYAYYGTDES
2PH1 Chain:A ((21-213))
-------------------------------------------IAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQ--KYGIKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLL-------IDLPP--GTGDAPLTVMQDAKPTG-VVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIFGEGKGES
General information:
TITO was launched using:
RESULT:
Template:
2PH1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44092 for 1306 contacts (-33.8/contact) +
2D Compatibility (PS) -19453 + (NN) -11795 + (LL) 3216
1D Compatibility (HY) -10400 + (ID) 3100
Total energy: -85624.0 ( -65.56 by residue)
QMean score : 0.405
(partial model without unconserved sides chains):
PDB file :
Tito_2PH1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PH1-query.scw
PDB file :
Tito_Scwrl_2PH1.pdb
: