Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLIFLIVIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPYNKLNKKVHINKDDIVAYSPILEKYVGKDITLKELIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTLNKLIANGKLSKKNKNFLLDLMFNNKNGDTLIKDGVPKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMKEF
1DJA Chain:A ((31-290))
------------------------KELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFAYASTSHAINSAILLEQVPYNKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMKEF
General information:
TITO was launched using:
RESULT:
Template:
1DJA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54431 for 2285 contacts (-23.8/contact) +
2D Compatibility (PS) -27698 + (NN) -11468 + (LL) 2428
1D Compatibility (HY) -32000 + (ID) 12550
Total energy: -135719.0 ( -59.40 by residue)
QMean score : 0.894
(partial model without unconserved sides chains):
PDB file :
Tito_1DJA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DJA-query.scw
PDB file :
Tito_Scwrl_1DJA.pdb
: