Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKKTIYFICTGNSCRSQMAEGWGKEILGEGWNVYSAGIETHGVNPKAIEAMKEVDIDISNHTSDLIDNDILKQSDLVVTLCSDADNNCPILPPNVKKEHWGFDDPAGKEWSEFQRVRDEIKLAIEKFKLR
1JFV Chain:A ((1-131))
MDKKTIYFISTGNSARSQMAEGWGKEILGEGWNVYSAGIETHGVNPKAIEAMKEVDIDISNHTSDLIDNDILKQSDLVVTLCSDADNNCPILPPNVKKEHWGFDDPAGKEWSEFQRVRDEIKLAIEKFKLR
General information:
TITO was launched using:
RESULT:
Template:
1JFV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50781 for 1056 contacts (-48.1/contact) +
2D Compatibility (PS) -14454 + (NN) -7359 + (LL) 0
1D Compatibility (HY) -16000 + (ID) 6400
Total energy: -94994.0 ( -89.96 by residue)
QMean score : 0.768
(partial model without unconserved sides chains):
PDB file :
Tito_1JFV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JFV-query.scw
PDB file :
Tito_Scwrl_1JFV.pdb
: