Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKTLLLSLSASSLLNAEDNGFFISAGYQIGEAAQMVKNTGELKKLSDTYENLSNLLTNFNNLNQAVTNASSPSEINAAIDNLKANTQGLIGEKTNSPAYQAVYLALNAAVGLWNVIAYNVQCGPGNSGQQSVTFEGQPGHNSSSINCNLTGYNNGVSGPLSIENFKKLNQAYQTIQQALKQDSGFPVLDSAGKQVTITITTQTNGANKSETTTTTTTTNDAQTLLQEASKMISVLTTNCPWVNHNQGQNGGAPWGLDTAGNVCQVFATEFSAVTSMIKNAQEIVTQAQSLNQQNNQNAPQDFNPYTSADRAFAQNMLNHAQAQAKILELADQMKKDLNTIPSQFITNYLAACHNGGGTLPDAGVTNNTWGAGCAYVEETITALNNSLAHFGTQAEQIKQSELLARTILDFRGSLSNLNNTYNSITTTASNTPNSPFLKNLISQSTNPNNPGGLQAVYQVNQSAYSQLLSATQELGHNPFRRVGLISSQTNNGAMNGIGVQVGYKQFFGEKRRWGLRYYGFFDYNHAYIKSSF-FNSASDVFTYGVGTDVLYNFINDKTTKNSKISFGVFGGIALAGTSWLNSQYVNLATFNNFYSAKMNVANFQFLFNLGLRMNLAKNKKKASDHAAQHGVELGVKIPTINTNYYSLLGTQLQYRRLYSVYLNYVFAY |
2X27 Chain:X ((43-175)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DSDTQLGLTFTYM--FA--DKWGVELVAATPFNHQVDVKGLLDGKLADIKQLPPTLLLQYYPMGGT-----NSAFQPYGGLGVNYTTFFDEDLASNRK-AQGFSSMKLQDSWGLAGELGFDYMLN----------EHALFNMAVWYMDIDTKASINGPSALGVNKTKVDVDVDPWVY |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2X27.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -12938 for 847 contacts (-15.3/contact) +
2D Compatibility (PS) -13277 + (NN) -925 + (LL) 26436
1D Compatibility (HY) -7200 + (ID) 950
Total energy: -8854.0 ( -10.45 by residue)
QMean score : -0.030
|
|
|