Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIKFVRNVVLFILTAIFLAFMLLVSYCMPHYSVAVISGVEVKRMNENENTPNNKEVKTLARDVYFVQTYDPKDQKSVTVYRNEDTRFGFPFY---FKFNSADISALAQSLVNQQVEVQYYGWRINLFNMFPNVIFLKPLKESDEMSKPVFSWILYALLLVGFFISARSVCTLFKGKAH |
2QCP Chain:X ((32-64)) | ------------------------------------------------------------------------------------AAVNWPEMTMRFTITPQTKMSEIK--TGDKVAFNFVQQGNLSLLQDIKVSQ------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2QCP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -2648 for 86 contacts (-30.8/contact) +
2D Compatibility (PS) -3104 + (NN) -197 + (LL) 10852
1D Compatibility (HY) -1600 + (ID) 150
Total energy: 3153.0 ( 36.66 by residue)
QMean score : 0.295
|
|
|