Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL
4BMX Chain:A ((22-251))
VQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVAIQLVQHDVDLSAFDHPLGFIPESAIFIETSESLNALAKEVANEQHIVLKEGVIASGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDN-------SFDAFLEKSAQTSAKFLKSMVDEL
General information:
TITO was launched using:
RESULT:
Template:
4BMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170297 for 1923 contacts (-88.6/contact) +
2D Compatibility (PS) -23367 + (NN) -3416 + (LL) 416
1D Compatibility (HY) -34400 + (ID) 10750
Total energy: -241814.0 ( -125.75 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_4BMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BMX-query.scw
PDB file :
Tito_Scwrl_4BMX.pdb
: