Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRYIKFFKELNNKNVNLVGGKNASIGEMFQELVPIGIKVPDGFAITSEAYWYLLEQGGAKQKIIELLENVDATEIDVLKIRSKQIRELIFGTPFPSDLRDEIFQAYEILSQQYHMKEAD------VAVRSSATAEDLPDASFAGQQDTYLNIKGKTELIHYIKSCLASLFTDRAISYRASRGFDHLKVALSVGV-----QKMVRADKGSAGVMFSIDTETGFKDAVFITSAWGLGENVVGGTINPDEF-------------YVFKPTLEQNKRPIIKRQLGN---------KTQKMVYAPRGSEHP-----TRNIKTTKKEWQS---FSLSDEDVLI---------------------LAKYAIEIEKHYSKEAKQYRPM-DIEWAKDGESGEIFIVQAR------PETVQ--------SQKTKEENQVFEKFK----FKNPNEKKEIILQGRAIGSKI------GSGKVRIINDLEHMNSFKEGE--ILVTDNTDPDWEPCMKKASAVITNRGGRTCHAAIVAREIGVPAIVGVS-------GATDSL--YTGMEITVSCAEGEEGYVYAGIYEHE-------IERVELSNMQETQTKIYINIGNPEKAFSFSQLPNHGVGLARMEMIILNQ---IKAHPLALVDLHHKKSVKEKNEIENLMAGYANPKDFFVKKIAEGIGMISAAFYPKPV--IVRTSDFKSNEYMRMLG-------GSSYEPNEENPMLGYRGA--SRYYSESYNEAFSWECEALALVREEMGLTNM-KVMIPFLRTIEEGK----KVLEILRKNNLESGKN-GLEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTLGVDR-------DSELVSHVFDERNEAML------KMFKKAIEACK--RHNKYCGICGQAPSDYPEVTEFLVKEGITSISLNPDSVIPTWNAVAKLEKELKDHGLTAR |
| 1GGO Chain:A ((2-855)) | -KWVYKFEEGNASMRNLLGGKGCNLAEM----TILGMPIPQGFTVTTEACTEYYNSG-------------------------KQITQ---------EIQDQIFEAITWLEELNGKKFGDTEDPLLVSVRSGAR------ASMPGMMDTILNLG----LNDVAVEGFAKKTGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHF--DTDLTADDLKELAEKF---KAVYKEAMNGEEFPQEPKDQLMGAVKAVFRSW--DNPRAIVYRRMNDIPGDWGTAVNVQTMVFGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGVRTPQPITQLENDMPDCYKQFMDLAMKLEKH-------FRDMQDMEFTI--EEGKLYFLQTRNGKRTAPAALQIACDLVDEGMITEEEAVVRIEAKSLDQLLHPTFNPAALKAGEVIGSALPASPGAAAGKVYFTAD-EAKAAHEKGERVILVRLETSPEDIEGMHAAEGILTVRGGMASHAAVVARGMGTCCVSGCGEIKINEEAKTFELGGHTFAEGDYISLDGSTGKI----IETQEASVSGSFERIMVWADKFRTLKVRTNADTPEDTLNAVKLGAEGIGLCRTEHMFFEADRIMKIRKMILSD-----SVEAREEALNELIPFQKGDFKAMYKALEGRPMTVRYLDP-PLHEFVPHTEEEQAELAKNMGLTLAEVKAKVDELHEFNPMMGHRGCRLAVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKKELKFVKDVVVEVAEQVKKEKGSDMQYHIGTMIEIPRAALTADAIAEEAEFFSFGTNDLTQMTFGFSRDDAGKFLDSYYKAKIYESDPFARLDQTGVGQLVEMAVKKGRQTRPGLKCGICGEHGGD-PSSVEFCHKVGLNYVSCSPFRVPIARLAAAQAALNNK------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GGO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -116373 for 5701 contacts (-20.4/contact) +
2D Compatibility (PS) -75549 + (NN) -22477 + (LL) 5448
1D Compatibility (HY) -31600 + (ID) 11150
Total energy: -251701.0 ( -44.15 by residue)
QMean score : 0.312
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