Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKMKTNRGASKRFKVKKNLIKRGSAFKSHILTKKSPKRKANLNAPKHVHHTNAHSVMSLLCRA
2YKR Chain:T ((3-15))
------IKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQ
General information:
TITO was launched using:
RESULT:
Template:
2YKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3158 for 44 contacts (71.8/contact) +
2D Compatibility (PS) -1354 + (NN) 86 + (LL) 456
1D Compatibility (HY) 800 + (ID) 150
Total energy: 2996.0 ( 68.09 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_2YKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YKR-query.scw
PDB file :
Tito_Scwrl_2YKR.pdb
: