Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIIPARLKSSRFENKMLEDIFGLPMVVRCAKNA--NLVDECVVACDDESIMKACQKFHIKAVLTSKHHNSGTERCLEAAQILGLKNDERVLNLQGDEPFLEKKVILALLE--ATQNAPFMATCAKVIDEEQAKSPNLVKVVLDSQNNALYFSRSLIPFLRD-----FDAKR---QTPLLGHIGIYGFHNKEILEELCALKPCVLEDTEKLEQLRALYYQKKILVKIVQSESMGIDTKEDLQNALKIFSPNLLKR
1VH3 Chain:A ((5-229))
-VIIPAR-----------------PMIQHVFEKALQSGASRVIIATDNENVADVAKSFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYR-AGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVEL----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VH3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132241 for 1531 contacts (-86.4/contact) +
2D Compatibility (PS) -21415 + (NN) -11661 + (LL) 3256
1D Compatibility (HY) -12800 + (ID) 3600
Total energy: -178461.0 ( -116.56 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_1VH3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VH3-query.scw
PDB file :
Tito_Scwrl_1VH3.pdb
: