Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLLIALVLFLWWLNLGAKEADFISDWEYGLALYKNPRGVACAKCHGIKGEQQEITFYYEKGEKKILYAPKINHLDFKTFKDALSLGKGMMPKYNLNLEEIQAIYLYITSLGHKDERKDPSKP
1C0E Chain:A ((39-123))
-----------WVIDSGA-----VSDWNVGRS--PDPRAVSCLRNHGINTAHK---------------ARQVTKEDFVTFDYILCMDESNLRDLNRKSNQVKNCRAKIELLGSYDPQKQLIIE
General information:
TITO was launched using:
RESULT:
Template:
1C0E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9496 for 464 contacts (-20.5/contact) +
2D Compatibility (PS) -8308 + (NN) 4306 + (LL) 3872
1D Compatibility (HY) -4000 + (ID) 1300
Total energy: -14926.0 ( -32.17 by residue)
QMean score : 0.325
(partial model without unconserved sides chains):
PDB file :
Tito_1C0E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C0E-query.scw
PDB file :
Tito_Scwrl_1C0E.pdb
: