Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFNYEELFQTYKTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLANLGSGADCVSIGEIQRALKAGIKPYKIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVEEKEALEMFLWAKKSAFLEPVSVHFHIGSQLLDLDPITEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETIKLYDYAQGILNSLQGLDLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPSLYHAKHAIRVITPCGGREISPCDVVGPVCESSDTFLKDANLPELEPGDKLAIEKVGAYGSSMASQYNSRPKLLE-LALEDHKIRVIRKREALEDLWRLEIEGLEGV |
2YXX Chain:A ((9-382)) | --------EIHGTPTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLKILREEGFGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVRIVNVDSFEEMEIWRELNPE-GVE--YFIRVNPEVDAKTHPHISTGLKKHKFGI-PLEDLDSFMERFRSMNIR--GLHVHIGSQITRVEPFVEAFSKVVRASERY-----GFEEINIGGGWGINYSGEE-LDLSSYREKVVPDLKRFK-RVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVLGKQGKE--MRADVVGPLCESGDVIAYDRELPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDVVM----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YXX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -186780 for 3160 contacts (-59.1/contact) +
2D Compatibility (PS) -39002 + (NN) -2361 + (LL) 2952
1D Compatibility (HY) -28400 + (ID) 7400
Total energy: -260991.0 ( -82.59 by residue)
QMean score : 0.481
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