Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPKKCRHLLQTSDLSLDEIKLLLNKASVYANDFNAVSLETREKMQ-----DKIIVALFFENSTRTVSSFEIASLRLGAKIVKL-NMQTSSTSKGETLIDTFKNIHAMQPDAIITRHAFSSAPFKLAEFSQCPLINAGSGTSAHPTQALLDLLTLYRHFGSLENLKGKKIAFIGDVKNSRVANSNIKLLQRLGLEIMLCAPSSM-LP---ITPLK-------TTHNIEEAIGFADILMSLRTQTERHNAPIFASLKDY---GNAYCITQKRLETHAKNKEVIILHPGPVHRDIDIESAVLEDKRSKVLEQVKNGVAMRMAVLEFLLLD |
| 1ML4 Chain:A ((2-305)) | -DWKGRDVISIRDFSKEDIETVLATA-------ERLERELKEKGQLEYAKGKILATLFFEPSTRTRLSFESAMHRLGGAVIGFAEASTSSVKKGESLRDTIKTVEQY-CDVIVIRHPKEGAARLAAEVAEVPVINAGDGSNQHPTQTLLDLYTIKKEFGRIDGL---KIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKER-----FPDEQEYLKVKGSYQVNLKVLEK-AKD-ELRIMHPLP--RVDEIHPEVDNTKHAIYFRQVFNGVPVRMALLALVLGV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1ML4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -174589 for 2410 contacts (-72.4/contact) +
2D Compatibility (PS) -31011 + (NN) -15373 + (LL) 1176
1D Compatibility (HY) -20400 + (ID) 5650
Total energy: -245847.0 ( -102.01 by residue)
QMean score : 0.469
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