Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQVEDKNAPILVLGTKATIQSNAYDNALKQQGYLNISHLATSLFVPLIEESILEGELLETCMHYYFTPLEILPEVIILGCTHFPLIAQKIEGYFMGHFALPTPPLLIHSGDAIVEYLQQK--YALKNNACTFPKVEFHASGDVIWLERQAKEWLKL
3UHP Chain:A ((1-247))
MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIKALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQSAMEYYFKNITT-PDALILACTHFPLLGRSLSKYF------GDKTKLIHSGDAIVEFLKERENIDLKNHKA---KLHFYASSDVESLKNTAKIWLNL
General information:
TITO was launched using:
RESULT:
Template:
3UHP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -244399 for 2110 contacts (-115.8/contact) +
2D Compatibility (PS) -26278 + (NN) -7829 + (LL) 752
1D Compatibility (HY) -31200 + (ID) 6900
Total energy: -315854.0 ( -149.69 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_3UHP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UHP-query.scw
PDB file :
Tito_Scwrl_3UHP.pdb
: