Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKPLNTAQVFIGSDHAGLHLAEFVKHFLEDKRFKIQAFLPT-------TRVDYPDYAKLVCQKVLENAQSYGILVCATGIGMSMGANRFKGIRAALCLDAYMAKMTRLHNNANVLCLGEKISGIGVAESILEAFFSTEFE-QGRHVLRIQKLDESLKS
3K7S Chain:A ((22-165))
------TRRVAIGTDHPAFAIHENLILYVKEAG---DEFVPVYCGPKTAESVDYPDFASRVAEMVARKEVEFGVLACGSGIGMSIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVGERTTGVEVIREIIITFLQTPFSGEERHVRRIEKIRAIEAS
General information:
TITO was launched using:
RESULT:
Template:
3K7S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125201 for 1158 contacts (-108.1/contact) +
2D Compatibility (PS) -14335 + (NN) -5215 + (LL) 548
1D Compatibility (HY) -12800 + (ID) 2850
Total energy: -159853.0 ( -138.04 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_3K7S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K7S-query.scw
PDB file :
Tito_Scwrl_3K7S.pdb
: